STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EYE88878.1PhoP family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)    
Predicted Functional Partners:
EYE89546.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.994
EYE89599.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 0.990
EYE88524.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 0.990
EYE88043.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.980
EYE88879.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.971
EYE87254.1
Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 0.927
EYE87804.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.924
EYE88870.1
Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.912
EYE87951.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  0.906
EYE89611.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.887
Your Current Organism:
Fervidicella metallireducens
NCBI taxonomy Id: 1403537
Other names: Clostridiaceae bacterium AeB, F. metallireducens AeB, Fervidicella metallireducens AeB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.