STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EYE88137.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (224 aa)    
Predicted Functional Partners:
EYE88120.1
Sporulation protein YqfC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.988
EYE88138.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
      0.902
EYE89294.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.811
EYE89833.1
Stage III sporulation protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.809
EYE88439.1
Hypothetical protein; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
   
 0.797
gpr
Germination protein; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
 
     0.795
EYE89788.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.794
EYE88107.1
Stage II sporulation protein P; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.788
EYE89691.1
Stage III sporulation protein AA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.781
EYE89693.1
Stage III sporulation protein AD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.775
Your Current Organism:
Fervidicella metallireducens
NCBI taxonomy Id: 1403537
Other names: Clostridiaceae bacterium AeB, F. metallireducens AeB, Fervidicella metallireducens AeB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.