STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EYE87550.1Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)    
Predicted Functional Partners:
EYE89633.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.616
EYE88534.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
  0.573
EYE89442.1
Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.566
EYE87551.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.542
EYE88098.1
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.534
EYE89461.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.434
EYE89506.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.411
Your Current Organism:
Fervidicella metallireducens
NCBI taxonomy Id: 1403537
Other names: Clostridiaceae bacterium AeB, F. metallireducens AeB, Fervidicella metallireducens AeB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.