STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHW64270.1Transcriptional regulator, AraC-family. (248 aa)    
Predicted Functional Partners:
AHW64272.1
ABC-type transporter, permease subunit.
 
  
 0.823
AHW64271.1
ABC-type bifunctional lipid A exporter.
 
  
 0.817
AHW64273.1
Putative membrane protein.
       0.602
siuU1
Sideophore-iron utilization protein.
  
    0.585
sigB
RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
 
 0.581
rpoD
RNA polymerase sigma factor rpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.581
AHW63575.1
Siderophore-interacting FAD-binding domain protein.
 
    0.556
AHW64670.1
Putative transcriptional regulator, GntR-family.
 
  
 0.542
AHW62790.1
Transcriptional regulator, GntR-family.
 
  
 0.538
AHW63649.1
Transcriptional regulator, AraC-family.
 
   0.512
Your Current Organism:
Corynebacterium glyciniphilum
NCBI taxonomy Id: 1404245
Other names: C. glyciniphilum AJ 3170, Corynebacterium glyciniphilum AJ 3170, Corynebacterium glyciniphilum ATCC 21341, Corynebacterium glyciniphilum DSM 45795
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