Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ARJ20122.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1358 aa)    
Predicted Functional Partners:
ARJ20121.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.963
ARJ20120.1
Phage tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.852
ARJ20525.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.846
ARJ21166.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.846
ARJ21775.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.846
B7492_22490
Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.846
ARJ20114.1
DNA-packaging protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.625
ARJ20113.1
Major capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.571
ARJ20111.1
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.569
ARJ20126.1
N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.539
Your Current Organism:
Bacillus mycoides
NCBI taxonomy Id: 1405
Other names: ATCC 6462, B. mycoides, Bacillus sp. B38V, Bacillus sp. CHR3P1B1, Bacillus sp. JP44SK50, Bacillus sp. JP44SK9, Bacillus sp. TAN 119, Bacillus weihenstephanensis, CCUG 26678, CIP 103472, CIP 105772 [[Bacillus weihenstephanensis]], DSM 11821 [[Bacillus weihenstephanensis]], DSM 2048, LMG 18989 [[Bacillus weihenstephanensis]], LMG 7128, LMG:18989 [[Bacillus weihenstephanensis]], LMG:7128, NBRC 101228, NBRC 101238 [[Bacillus weihenstephanensis]], NCTC 12974, NRRL B-14799, NRRL B-14811, NRRL B-23307 [[Bacillus weihenstephanensis]], NRRL NRS-273, WSBC 10204 [[Bacillus weihenstephanensis]]
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