Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AIY09677.1 | nikA | LK13_14290 | LK13_12185 | Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.559 |
| AIY09677.1 | nikB3 | LK13_14290 | LK13_12180 | Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nickel transporter permease NikB; With NikACDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.863 |
| AIY09677.1 | nikD | LK13_14290 | LK13_12170 | Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.983 |
| AIY09677.1 | nikE | LK13_14290 | LK13_12165 | Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.972 |
| dppC1 | nikA | LK13_17875 | LK13_12185 | Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.423 |
| dppC1 | nikB3 | LK13_17875 | LK13_12180 | Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nickel transporter permease NikB; With NikACDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.842 |
| dppC1 | nikD | LK13_17875 | LK13_12170 | Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.982 |
| dppC1 | nikE | LK13_17875 | LK13_12165 | Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.974 |
| nikA | AIY09677.1 | LK13_12185 | LK13_14290 | Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.559 |
| nikA | dppC1 | LK13_12185 | LK13_17875 | Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.423 |
| nikA | nikB3 | LK13_12185 | LK13_12180 | Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nickel transporter permease NikB; With NikACDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.994 |
| nikA | nikC-2 | LK13_12185 | LK13_12175 | Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nickel transporter permease NikC; With NikABDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.996 |
| nikA | nikC-3 | LK13_12185 | LK13_12200 | Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nickel transporter permease NikC; With NikABDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.930 |
| nikA | nikD | LK13_12185 | LK13_12170 | Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.980 |
| nikA | nikE | LK13_12185 | LK13_12165 | Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.976 |
| nikA | oppC5 | LK13_12185 | LK13_23355 | Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.566 |
| nikA | oppC7 | LK13_12185 | LK13_04010 | Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.414 |
| nikA | oppC9 | LK13_12185 | LK13_12905 | Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.553 |
| nikB3 | AIY09677.1 | LK13_12180 | LK13_14290 | Nickel transporter permease NikB; With NikACDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. | Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.863 |
| nikB3 | dppC1 | LK13_12180 | LK13_17875 | Nickel transporter permease NikB; With NikACDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. | Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.842 |
page 1 of 4