Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| fabG3 | luxS | LK13_15845 | LK13_15840 | Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | S-ribosylhomocysteinase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | 0.857 |
| fabG3 | metQ1 | LK13_15845 | LK13_15850 | Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.675 |
| luxS | fabG3 | LK13_15840 | LK13_15845 | S-ribosylhomocysteinase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.857 |
| luxS | metQ1 | LK13_15840 | LK13_15850 | S-ribosylhomocysteinase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.735 |
| luxS | yitJ | LK13_15840 | LK13_03125 | S-ribosylhomocysteinase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | Homocysteine methyltransferase; Catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.953 |
| metI | metI1 | LK13_15170 | LK13_17645 | Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.905 |
| metI | metN | LK13_15170 | LK13_07770 | Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. | 0.993 |
| metI | metN-2 | LK13_15170 | LK13_15165 | Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. | 0.999 |
| metI | metQ1 | LK13_15170 | LK13_15850 | Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.987 |
| metI | metQ3 | LK13_15170 | LK13_17650 | Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family. | 0.994 |
| metI | metQ5 | LK13_15170 | LK13_07760 | Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family. | 0.997 |
| metI | yaeE | LK13_15170 | LK13_07765 | Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.907 |
| metI | yitJ | LK13_15170 | LK13_03125 | Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Homocysteine methyltransferase; Catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.587 |
| metI1 | metI | LK13_17645 | LK13_15170 | Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.905 |
| metI1 | metN | LK13_17645 | LK13_07770 | Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. | 0.993 |
| metI1 | metN-2 | LK13_17645 | LK13_15165 | Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. | 0.993 |
| metI1 | metQ1 | LK13_17645 | LK13_15850 | Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.986 |
| metI1 | metQ3 | LK13_17645 | LK13_17650 | Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family. | 0.996 |
| metI1 | metQ5 | LK13_17645 | LK13_07760 | Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nlpA lipoprotein family. | 0.996 |
| metI1 | yaeE | LK13_17645 | LK13_07765 | Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.908 |
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