STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HHUB_1492Abi/CAAX domain protein. (274 aa)    
Predicted Functional Partners:
HHUB_2669
DUF181 family protein.
 
  
 0.782
HHUB_1491
Homolog to Sec-independent protein translocase subunit TatA.
       0.647
HHUB_3628
Uncharacterized protein.
   
    0.627
HHUB_2117
Nitroreductase family protein.
 
  
 0.608
HHUB_2322
MOSC domain protein.
 
     0.565
HHUB_2074
ABC-type transport system permease protein.
 
  
 0.558
HHUB_1126
HAD superfamily hydrolase.
 
    0.557
HHUB_3614
Tetratricopeptide repeat protein.
 
    0.556
nreA
DNA repair protein NreA; Involved in DNA damage repair.
       0.536
artA
Archaeosortase A.
  
    0.532
Your Current Organism:
Halobacterium hubeiense
NCBI taxonomy Id: 1407499
Other names: H. hubeiense, HAMBI 3616, Halobacterium sp. JI20-1, strain JI20-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.