STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HHUB_2850P-type transport ATPase (probable substrate zinc/cadmium). (641 aa)    
Predicted Functional Partners:
HHUB_2851
HMA domain protein.
 
   
 0.876
HHUB_2849
Uncharacterized protein.
       0.663
HHUB_2852
ArsR family transcription regulator.
  
  
 0.584
HHUB_2848
Peptidase M23 family protein.
 
    0.473
HHUB_2682
Probable copper-containing oxidoreductase.
 
  
 0.460
nirK
Nitrite reductase, copper-containing.
 
  
 0.437
dnaK
Hsp70-type molecular chaperone DnaK; Acts as a chaperone.
 
 
 0.400
Your Current Organism:
Halobacterium hubeiense
NCBI taxonomy Id: 1407499
Other names: H. hubeiense, HAMBI 3616, Halobacterium sp. JI20-1, strain JI20-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.