Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HHUB_2703 | HHUB_2929 | HHUB_2703 | HHUB_2929 | P-type transport ATPase (probable substrate zinc/cadmium). | NikR family transcription regulator; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family. | 0.687 |
HHUB_2703 | HHUB_3111 | HHUB_2703 | HHUB_3111 | P-type transport ATPase (probable substrate zinc/cadmium). | Uncharacterized protein. | 0.678 |
HHUB_2929 | HHUB_2703 | HHUB_2929 | HHUB_2703 | NikR family transcription regulator; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family. | P-type transport ATPase (probable substrate zinc/cadmium). | 0.687 |
HHUB_2929 | HHUB_3111 | HHUB_2929 | HHUB_3111 | NikR family transcription regulator; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family. | Uncharacterized protein. | 0.668 |
HHUB_3110 | HHUB_3111 | HHUB_3110 | HHUB_3111 | DUF2071 family protein. | Uncharacterized protein. | 0.562 |
HHUB_3111 | HHUB_2703 | HHUB_3111 | HHUB_2703 | Uncharacterized protein. | P-type transport ATPase (probable substrate zinc/cadmium). | 0.678 |
HHUB_3111 | HHUB_2929 | HHUB_3111 | HHUB_2929 | Uncharacterized protein. | NikR family transcription regulator; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family. | 0.668 |
HHUB_3111 | HHUB_3110 | HHUB_3111 | HHUB_3110 | Uncharacterized protein. | DUF2071 family protein. | 0.562 |
HHUB_3111 | sod1 | HHUB_3111 | HHUB_2367 | Uncharacterized protein. | Superoxide dismutase (Mn); Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.432 |
HHUB_3111 | sod2 | HHUB_3111 | HHUB_2678 | Uncharacterized protein. | Superoxide dismutase (Mn); Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.432 |
sod1 | HHUB_3111 | HHUB_2367 | HHUB_3111 | Superoxide dismutase (Mn); Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Uncharacterized protein. | 0.432 |
sod2 | HHUB_3111 | HHUB_2678 | HHUB_3111 | Superoxide dismutase (Mn); Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Uncharacterized protein. | 0.432 |