A0A1J7IDR7 protein (Coniochaeta ligniaria) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1J7IDR7

Brix-domain-containing protein. (308 aa)

Predicted Functional Partners:

A0A1J7IR52

0.997

A0A1J7JEE8

0.995

A0A1J7IJK3

0.993

A0A1J7J1P4

0.992

A0A1J7JKM6

0.992

ERB1

0.992

A0A1J7K1E3

0.992

A0A1J7JPB9

0.991

A0A1J7IZU6

0.990

A0A1J7J3D4

0.990

Your Current Organism:

Coniochaeta ligniaria

NCBI taxonomy Id: 1408157
Other names: C. ligniaria NRRL 30616, Coniochaeta ligniaria NRRL 30616

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1J7IDR7	A0A1J7IJK3	A0A1J7IDR7	A0A1J7IJK3	Brix-domain-containing protein.	RNA-binding domain-containing protein.	0.993
A0A1J7IDR7	A0A1J7IR52	A0A1J7IDR7	A0A1J7IR52	Brix-domain-containing protein.	Ebp2-domain-containing protein.	0.997
A0A1J7IDR7	A0A1J7IZU6	A0A1J7IDR7	A0A1J7IZU6	Brix-domain-containing protein.	NOL1/NOP2/sun family putative RNA met; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.990
A0A1J7IDR7	A0A1J7J1P4	A0A1J7IDR7	A0A1J7J1P4	Brix-domain-containing protein.	Brix-domain-containing protein.	0.992
A0A1J7IDR7	A0A1J7J3D4	A0A1J7IDR7	A0A1J7J3D4	Brix-domain-containing protein.	Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family.	0.990
A0A1J7IDR7	A0A1J7JEE8	A0A1J7IDR7	A0A1J7JEE8	Brix-domain-containing protein.	Nucleolar.	0.995
A0A1J7IDR7	A0A1J7JKM6	A0A1J7IDR7	A0A1J7JKM6	Brix-domain-containing protein.	Ribosomal protein L1.	0.992
A0A1J7IDR7	A0A1J7JPB9	A0A1J7IDR7	A0A1J7JPB9	Brix-domain-containing protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.991
A0A1J7IDR7	A0A1J7K1E3	A0A1J7IDR7	A0A1J7K1E3	Brix-domain-containing protein.	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.992
A0A1J7IDR7	ERB1	A0A1J7IDR7	A0A1J7JZE9	Brix-domain-containing protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.992
A0A1J7IJK3	A0A1J7IDR7	A0A1J7IJK3	A0A1J7IDR7	RNA-binding domain-containing protein.	Brix-domain-containing protein.	0.993
A0A1J7IJK3	A0A1J7IR52	A0A1J7IJK3	A0A1J7IR52	RNA-binding domain-containing protein.	Ebp2-domain-containing protein.	0.996
A0A1J7IJK3	A0A1J7IZU6	A0A1J7IJK3	A0A1J7IZU6	RNA-binding domain-containing protein.	NOL1/NOP2/sun family putative RNA met; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.995
A0A1J7IJK3	A0A1J7J1P4	A0A1J7IJK3	A0A1J7J1P4	RNA-binding domain-containing protein.	Brix-domain-containing protein.	0.996
A0A1J7IJK3	A0A1J7J3D4	A0A1J7IJK3	A0A1J7J3D4	RNA-binding domain-containing protein.	Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family.	0.993
A0A1J7IJK3	A0A1J7JEE8	A0A1J7IJK3	A0A1J7JEE8	RNA-binding domain-containing protein.	Nucleolar.	0.991
A0A1J7IJK3	A0A1J7JKM6	A0A1J7IJK3	A0A1J7JKM6	RNA-binding domain-containing protein.	Ribosomal protein L1.	0.998
A0A1J7IJK3	A0A1J7JPB9	A0A1J7IJK3	A0A1J7JPB9	RNA-binding domain-containing protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.996
A0A1J7IJK3	A0A1J7K1E3	A0A1J7IJK3	A0A1J7K1E3	RNA-binding domain-containing protein.	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.995
A0A1J7IJK3	ERB1	A0A1J7IJK3	A0A1J7JZE9	RNA-binding domain-containing protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.984