STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1J7IF35S-adenosyl-L-methionine-dependent methyltransferase. (330 aa)    
Predicted Functional Partners:
A0A1J7J9I3
DUF663-domain-containing protein.
   
  0.628
A0A1J7JQF4
Bystin-domain-containing protein.
   
  0.623
A0A1J7JAC4
Low temperature viability protein.
   
  0.618
A0A1J7JL02
C-8 sterol isomerase.
   
 0.618
A0A1J7JK38
20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.
   
 0.615
A0A1J7J438
40S ribosomal protein S19.
   
  0.613
A0A1J7IF09
Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.
    
 0.605
A0A1J7IJ07
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
    
 0.605
A0A1J7IUW1
40S ribosomal protein S27.
    
  0.604
A0A1J7JD49
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
    
  0.603
Your Current Organism:
Coniochaeta ligniaria
NCBI taxonomy Id: 1408157
Other names: C. ligniaria NRRL 30616, Coniochaeta ligniaria NRRL 30616
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