STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1J7IML3DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. (1391 aa)    
Predicted Functional Partners:
A0A1J7IQX2
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
 0.999
A0A1J7J6B8
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  
 0.882
A0A1J7K0C5
HMG box domain-containing protein.
    
 0.847
A0A1J7JQB8
P-loop containing nucleoside triphosphate hydrolase protein.
   
  
 0.828
A0A1J7JNN6
HMG box domain-containing protein.
    
 0.826
A0A1J7J1N1
Uncharacterized protein.
    
 0.821
A0A1J7J4P2
HMG box domain-containing protein.
    
 0.821
A0A1J7IVB2
Zn(2)-C6 fungal-type domain-containing protein.
    
 0.801
A0A1J7JA08
Uncharacterized protein.
    
 0.801
A0A1J7IZL8
Sas10 domain-containing protein.
   
    0.732
Your Current Organism:
Coniochaeta ligniaria
NCBI taxonomy Id: 1408157
Other names: C. ligniaria NRRL 30616, Coniochaeta ligniaria NRRL 30616
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