STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1J7INM4tRNA ligase. (825 aa)    
Predicted Functional Partners:
A0A1J7IEZ3
Yae1_N domain-containing protein.
   
  
 0.524
A0A1J7K1C1
Uncharacterized protein.
      
 0.505
A0A1J7IY94
Uncharacterized protein.
      
 0.504
A0A1J7IZ56
PAXNEB-domain-containing protein.
      
 0.504
A0A1J7J3C7
Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.
      
 0.504
A0A1J7IIE5
tRNA_int_end_N2 domain-containing protein.
      
 0.501
A0A1J7JVJ3
Sen15 domain-containing protein.
      
 0.481
A0A1J7JLL3
BZIP domain-containing protein.
      
 0.467
A0A1J7JGV8
Phenylalanyl-tRNA synthetase.
      
 0.457
A0A1J7JXN5
ATP-dependent RNA helicase eIF4A; Belongs to the DEAD box helicase family.
      
 0.457
Your Current Organism:
Coniochaeta ligniaria
NCBI taxonomy Id: 1408157
Other names: C. ligniaria NRRL 30616, Coniochaeta ligniaria NRRL 30616
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