STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1J7IPQ1Cyclin-like protein. (382 aa)    
Predicted Functional Partners:
A0A1J7I8P3
CDK-activating kinase assembly factor.
   
 0.999
A0A1J7IRT2
Serine/threonine-protein kinase; Belongs to the protein kinase superfamily.
    
 0.999
A0A1J7IHM9
Transcription factor Tfb4.
   
 0.996
A0A1J7JPG1
HTH TFE/IIEalpha-type domain-containing protein.
    
 0.993
A0A1J7IC80
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
    
 0.992
A0A1J7IKP6
DNA repair helicase.
    
 0.991
A0A1J7IJ91
TFIIH p62 subunit domain-containing protein.
    
 0.989
A0A1J7J3L2
DNA repair helicase rad25.
    
 0.985
A0A1J7J644
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.985
A0A1J7JCB0
Putative transcription factor.
   
 0.984
Your Current Organism:
Coniochaeta ligniaria
NCBI taxonomy Id: 1408157
Other names: C. ligniaria NRRL 30616, Coniochaeta ligniaria NRRL 30616
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