STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1J7IS19Small nuclear ribonucleoprotein G. (82 aa)    
Predicted Functional Partners:
A0A1J7IQT0
Small nuclear ribonucleoprotein Sm D2.
   
 0.999
A0A1J7IRA3
Small nuclear ribonucleoprotein Sm D3.
   
 0.999
A0A1J7IRI4
LSM domain-containing protein.
   
 0.999
A0A1J7IRZ4
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.999
A0A1J7JZL3
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.999
A0A1J7J2L5
PHF5-like protein.
   
 0.997
A0A1J7J295
RNA-binding domain-containing protein.
   
 0.996
A0A1J7JPF6
L domain-like protein.
   
 0.996
A0A1J7J1B0
Nuclear cap-binding protein subunit 2.
   
 0.995
A0A1J7J431
Pre-mRNA processing splicing factor 8.
   
 0.994
Your Current Organism:
Coniochaeta ligniaria
NCBI taxonomy Id: 1408157
Other names: C. ligniaria NRRL 30616, Coniochaeta ligniaria NRRL 30616
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