STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1J7ITN5DUF2439 domain-containing protein. (899 aa)    
Predicted Functional Partners:
A0A1J7I495
Smg4_UPF3 domain-containing protein.
    
 0.950
A0A1J7IXW4
ARM repeat-containing protein.
   
 0.950
A0A1J7JJ72
Uncharacterized protein.
    
 0.930
A0A1J7I9D2
RNA-binding domain-containing protein.
    
 0.913
A0A1J7IP09
Dcp1-like decapping family protein.
    
 0.885
A0A1J7IWR8
Tr-type G domain-containing protein.
    
 0.860
A0A1J7IPW5
Uncharacterized protein.
    
 0.843
A0A1J7J1B0
Nuclear cap-binding protein subunit 2.
    
 0.839
A0A1J7J6H7
Phosphatidylinositol 3-kinase-like protein; Belongs to the PI3/PI4-kinase family.
    
 0.824
A0A1J7JFW8
HRDC domain-containing protein.
    
 0.824
Your Current Organism:
Coniochaeta ligniaria
NCBI taxonomy Id: 1408157
Other names: C. ligniaria NRRL 30616, Coniochaeta ligniaria NRRL 30616
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