A0A1J7IYI3 protein (Coniochaeta ligniaria) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1J7IYI3

Uncharacterized protein. (347 aa)

Predicted Functional Partners:

A0A1J7JNE7

0.992

A0A1J7I7B6

0.991

A0A1J7I895

0.991

A0A1J7IEK9

0.991

A0A1J7IT66

0.991

A0A1J7J1T9

0.991

A0A1J7J2N6

0.991

A0A1J7J2X4

0.991

A0A1J7J6U2

0.991

A0A1J7JDZ7

0.991

Your Current Organism:

Coniochaeta ligniaria

NCBI taxonomy Id: 1408157
Other names: C. ligniaria NRRL 30616, Coniochaeta ligniaria NRRL 30616

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1J7I7B6	A0A1J7I895	Cytosolic large ribosomal subunit protein L30.	60S ribosomal protein L5.	0.999
A0A1J7I7B6	A0A1J7IEK9	Cytosolic large ribosomal subunit protein L30.	Putative 60S ribosomal protein L31.	0.999
A0A1J7I7B6	A0A1J7IT66	Cytosolic large ribosomal subunit protein L30.	Uncharacterized protein.	0.999
A0A1J7I7B6	A0A1J7IYI3	Cytosolic large ribosomal subunit protein L30.	Uncharacterized protein.	0.991
A0A1J7I7B6	A0A1J7J1T9	Cytosolic large ribosomal subunit protein L30.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
A0A1J7I7B6	A0A1J7J2N6	Cytosolic large ribosomal subunit protein L30.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
A0A1J7I7B6	A0A1J7J2X4	Cytosolic large ribosomal subunit protein L30.	60S ribosomal protein L7.	0.999
A0A1J7I7B6	A0A1J7J6U2	Cytosolic large ribosomal subunit protein L30.	60S ribosomal protein L9.	0.999
A0A1J7I7B6	A0A1J7JDZ7	Cytosolic large ribosomal subunit protein L30.	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.999
A0A1J7I7B6	A0A1J7JNE7	Cytosolic large ribosomal subunit protein L30.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
A0A1J7I895	A0A1J7I7B6	60S ribosomal protein L5.	Cytosolic large ribosomal subunit protein L30.	0.999
A0A1J7I895	A0A1J7IEK9	60S ribosomal protein L5.	Putative 60S ribosomal protein L31.	0.999
A0A1J7I895	A0A1J7IT66	60S ribosomal protein L5.	Uncharacterized protein.	0.999
A0A1J7I895	A0A1J7IYI3	60S ribosomal protein L5.	Uncharacterized protein.	0.991
A0A1J7I895	A0A1J7J1T9	60S ribosomal protein L5.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
A0A1J7I895	A0A1J7J2N6	60S ribosomal protein L5.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
A0A1J7I895	A0A1J7J2X4	60S ribosomal protein L5.	60S ribosomal protein L7.	0.999
A0A1J7I895	A0A1J7J6U2	60S ribosomal protein L5.	60S ribosomal protein L9.	0.999
A0A1J7I895	A0A1J7JDZ7	60S ribosomal protein L5.	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.999
A0A1J7I895	A0A1J7JNE7	60S ribosomal protein L5.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999