STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1J7J0K9TPR domain protein. (562 aa)    
Predicted Functional Partners:
A0A1J7IC72
Uncharacterized protein.
    
 0.573
A0A1J7IP15
RRM domain-containing protein.
    
 0.573
A0A1J7J2P1
Ribosomal protein L32e.
 
      0.467
A0A1J7IDR1
Uncharacterized protein.
    
 0.452
A0A1J7IK56
Uncharacterized protein.
 
  
   0.436
A0A1J7J295
RNA-binding domain-containing protein.
    
 0.422
A0A1J7IY71
Isochorismatase hydrolase.
    
   0.408
A0A1J7JE23
Splicing factor, CC1-like protein.
    
 
 0.408
A0A1J7JGK9
Uncharacterized protein.
    
   0.408
A0A1J7J670
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.407
Your Current Organism:
Coniochaeta ligniaria
NCBI taxonomy Id: 1408157
Other names: C. ligniaria NRRL 30616, Coniochaeta ligniaria NRRL 30616
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.