STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TIF6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (246 aa)    
Predicted Functional Partners:
A0A1J7IEK9
Putative 60S ribosomal protein L31.
  
 
 0.997
A0A1J7I7B6
Cytosolic large ribosomal subunit protein L30.
   
 
 0.996
A0A1J7IFU4
60S ribosomal protein L20.
  
 
 0.996
A0A1J7JDZ7
60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
  
 
 0.992
A0A1J7J2X4
60S ribosomal protein L7.
  
 
 0.991
A0A1J7JVC4
Ribosomal protein L34e.
  
 
 0.991
A0A1J7IKP4
Ribosomal protein L24.
  
 
 0.990
A0A1J7J101
60S ribosomal protein L10.
   
 
 0.989
A0A1J7J1J3
TRASH domain-containing protein.
   
 
 0.989
A0A1J7JPB9
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.989
Your Current Organism:
Coniochaeta ligniaria
NCBI taxonomy Id: 1408157
Other names: C. ligniaria NRRL 30616, Coniochaeta ligniaria NRRL 30616
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