A0A1J7J240 protein (Coniochaeta ligniaria) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1J7J240

CoA-transferase family III. (631 aa)

Predicted Functional Partners:

A0A1J7IIG3

0.736

A0A1J7IYI1

0.639

A0A1J7J631

0.639

A0A1J7K3S6

0.639

A0A1J7J773

0.620

A0A1J7IUC0

0.608

A0A1J7JX36

0.603

A0A1J7ILC0

0.577

A0A1J7IN87

0.577

A0A1J7J6Y6

0.577

Your Current Organism:

Coniochaeta ligniaria

NCBI taxonomy Id: 1408157
Other names: C. ligniaria NRRL 30616, Coniochaeta ligniaria NRRL 30616

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1J7IIG3	A0A1J7ILC0	Nonspecific lipid-transfer protein, mitochondrial; Belongs to the thiolase-like superfamily. Thiolase family.	NAD(P)-binding protein.	0.967
A0A1J7IIG3	A0A1J7IN87	Nonspecific lipid-transfer protein, mitochondrial; Belongs to the thiolase-like superfamily. Thiolase family.	Sterol-binding-like protein.	0.881
A0A1J7IIG3	A0A1J7IUC0	Nonspecific lipid-transfer protein, mitochondrial; Belongs to the thiolase-like superfamily. Thiolase family.	NAD(P)-binding protein.	0.451
A0A1J7IIG3	A0A1J7IYI1	Nonspecific lipid-transfer protein, mitochondrial; Belongs to the thiolase-like superfamily. Thiolase family.	Acetolactate synthase.	0.758
A0A1J7IIG3	A0A1J7J240	Nonspecific lipid-transfer protein, mitochondrial; Belongs to the thiolase-like superfamily. Thiolase family.	CoA-transferase family III.	0.736
A0A1J7IIG3	A0A1J7J631	Nonspecific lipid-transfer protein, mitochondrial; Belongs to the thiolase-like superfamily. Thiolase family.	Thiamine pyrophosphate protein TPP binding domain protein; Belongs to the TPP enzyme family.	0.826
A0A1J7IIG3	A0A1J7J6Y6	Nonspecific lipid-transfer protein, mitochondrial; Belongs to the thiolase-like superfamily. Thiolase family.	Peroxisomal multifunctional enzyme.	0.973
A0A1J7IIG3	A0A1J7JX36	Nonspecific lipid-transfer protein, mitochondrial; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.965
A0A1J7IIG3	A0A1J7K3S6	Nonspecific lipid-transfer protein, mitochondrial; Belongs to the thiolase-like superfamily. Thiolase family.	Acetolactate synthase; Belongs to the TPP enzyme family.	0.758
A0A1J7ILC0	A0A1J7IIG3	NAD(P)-binding protein.	Nonspecific lipid-transfer protein, mitochondrial; Belongs to the thiolase-like superfamily. Thiolase family.	0.967
A0A1J7ILC0	A0A1J7IN87	NAD(P)-binding protein.	Sterol-binding-like protein.	0.750
A0A1J7ILC0	A0A1J7IUC0	NAD(P)-binding protein.	NAD(P)-binding protein.	0.697
A0A1J7ILC0	A0A1J7IYI1	NAD(P)-binding protein.	Acetolactate synthase.	0.627
A0A1J7ILC0	A0A1J7J240	NAD(P)-binding protein.	CoA-transferase family III.	0.577
A0A1J7ILC0	A0A1J7J631	NAD(P)-binding protein.	Thiamine pyrophosphate protein TPP binding domain protein; Belongs to the TPP enzyme family.	0.627
A0A1J7ILC0	A0A1J7JX36	NAD(P)-binding protein.	Uncharacterized protein.	0.958
A0A1J7ILC0	A0A1J7K3S6	NAD(P)-binding protein.	Acetolactate synthase; Belongs to the TPP enzyme family.	0.627
A0A1J7IN87	A0A1J7IIG3	Sterol-binding-like protein.	Nonspecific lipid-transfer protein, mitochondrial; Belongs to the thiolase-like superfamily. Thiolase family.	0.881
A0A1J7IN87	A0A1J7ILC0	Sterol-binding-like protein.	NAD(P)-binding protein.	0.750
A0A1J7IN87	A0A1J7IYI1	Sterol-binding-like protein.	Acetolactate synthase.	0.627