STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1J7J342Uncharacterized protein. (163 aa)    
Predicted Functional Partners:
A0A1J7JU47
Uncharacterized protein.
   
   0.932
A0A1J7J8A2
Noc2-domain-containing protein.
   
 
 0.924
ERB1
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 
 0.923
A0A1J7ILI8
Utp21-domain-containing protein.
   
 
 0.914
A0A1J7J934
RNA helicase.
   
   0.908
A0A1J7JKM6
Ribosomal protein L1.
   
 
 0.897
A0A1J7JJQ6
ATP dependent RNA helicase.
   
 
 0.893
A0A1J7J7P8
WD40 repeat-like protein.
   
  
 0.890
A0A1J7K3K4
CP-type G domain-containing protein.
   
 
 0.888
A0A1J7JLT8
Periodic tryptophan protein 2-like protein.
   
  
 0.886
Your Current Organism:
Coniochaeta ligniaria
NCBI taxonomy Id: 1408157
Other names: C. ligniaria NRRL 30616, Coniochaeta ligniaria NRRL 30616
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.