STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1J7J3Z3Uncharacterized protein. (432 aa)    
Predicted Functional Partners:
A0A1J7J4K6
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.890
A0A1J7J8L1
Histone deacetylase.
   
 0.890
A0A1J7JDW4
Uncharacterized protein.
    
 0.885
A0A1J7JLV4
Subunit C of CAF1 complex-like protein.
    
 0.872
A0A1J7JJ48
PHD-type domain-containing protein.
   
 
 0.850
A0A1J7IEJ4
Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.
    
 0.814
A0A1J7JLC6
Arginase/deacetylase.
    
 0.814
A0A1J7J2F2
MRG-domain-containing protein.
    
 0.807
A0A1J7J7C1
Uncharacterized protein.
    
 0.709
A0A1J7IHX2
Lish protein.
   
 0.676
Your Current Organism:
Coniochaeta ligniaria
NCBI taxonomy Id: 1408157
Other names: C. ligniaria NRRL 30616, Coniochaeta ligniaria NRRL 30616
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