STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1J7J7D9Sec63-domain-containing protein. (2213 aa)    
Predicted Functional Partners:
A0A1J7J431
Pre-mRNA processing splicing factor 8.
   
 0.995
A0A1J7J989
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.986
A0A1J7J398
PRP1 splicing factor.
   
 0.983
A0A1J7IWT9
Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.
    
 0.976
A0A1J7IRA3
Small nuclear ribonucleoprotein Sm D3.
   
 0.974
A0A1J7IRI4
LSM domain-containing protein.
   
 0.974
A0A1J7IRZ4
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.974
A0A1J7JXW1
Pre-mRNA-splicing ATP-dependent RNA helicase prp-28; Belongs to the DEAD box helicase family.
   
 0.974
A0A1J7JHM2
WD40 repeat-like protein.
   
 0.973
A0A1J7IQT0
Small nuclear ribonucleoprotein Sm D2.
   
 0.972
Your Current Organism:
Coniochaeta ligniaria
NCBI taxonomy Id: 1408157
Other names: C. ligniaria NRRL 30616, Coniochaeta ligniaria NRRL 30616
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.