STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1J7JE95Matrin-type domain-containing protein. (245 aa)    
Predicted Functional Partners:
A0A1J7IQ80
RNA-binding domain-containing protein.
   
 0.997
A0A1J7JLC5
Uncharacterized protein.
   
 0.997
A0A1J7JRH2
Matrin-type domain-containing protein.
    
 0.997
A0A1J7JMF7
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.996
A0A1J7J2L5
PHF5-like protein.
    
 0.995
A0A1J7J6R7
P-loop containing nucleoside triphosphate hydrolase protein.
    
 0.995
A0A1J7JEQ8
DUF382-domain-containing protein.
   
 0.995
A0A1J7JPF6
L domain-like protein.
    
 0.995
A0A1J7JQD3
U2 snRNP component prp10.
    
 0.995
A0A1J7JVR1
Pre-mRNA-splicing factor rse-1.
   
 0.995
Your Current Organism:
Coniochaeta ligniaria
NCBI taxonomy Id: 1408157
Other names: C. ligniaria NRRL 30616, Coniochaeta ligniaria NRRL 30616
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