STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1J7JJN2Vps5-domain-containing protein. (576 aa)    
Predicted Functional Partners:
A0A1J7IJ45
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 
 0.975
A0A1J7JEZ3
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.975
A0A1J7J7S8
Vacuolar protein sorting-associated protein 26.
   
 
 0.974
A0A1J7ILZ7
Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.
    
 
0.953
A0A1J7JLW9
NAD(P)-binding protein.
 
  
   0.907
A0A1J7J6D6
Sortilin; Functions as a sorting receptor in the Golgi compartment required for the intracellular sorting and delivery of soluble vacuolar proteins, like carboxypeptidase Y (CPY) and proteinase A.
    
 0.811
A0A1J7JYU4
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.775
A0A1J7ISV8
ANTH-domain-containing protein.
   
 0.759
A0A1J7IVC5
Synaptobrevin.
    
 0.742
A0A1J7JKN3
AP-1 complex subunit gamma.
     
 0.737
Your Current Organism:
Coniochaeta ligniaria
NCBI taxonomy Id: 1408157
Other names: C. ligniaria NRRL 30616, Coniochaeta ligniaria NRRL 30616
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