A0A1J7JPC2 protein (Coniochaeta ligniaria) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1J7JPC2

Protein YOP1. (169 aa)

Predicted Functional Partners:

SEY1

0.891

A0A1J7JP39

0.799

A0A1J7IU80

0.601

A0A1J7JQN7

0.592

A0A1J7JAC2

0.569

A0A1J7IB29

0.541

A0A1J7IB07

0.536

A0A1J7IGG4

0.503

A0A1J7JB80

0.485

A0A1J7IS88

0.482

Your Current Organism:

Coniochaeta ligniaria

NCBI taxonomy Id: 1408157
Other names: C. ligniaria NRRL 30616, Coniochaeta ligniaria NRRL 30616

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1J7IB07	A0A1J7JB80	A0A1J7IB07	A0A1J7JB80	Putative Golgi membrane protein.	Er to golgi transport protein yif1.	0.954
A0A1J7IB07	A0A1J7JPC2	A0A1J7IB07	A0A1J7JPC2	Putative Golgi membrane protein.	Protein YOP1.	0.536
A0A1J7IB29	A0A1J7JPC2	A0A1J7IB29	A0A1J7JPC2	Integral peroxisomal membrane peroxin.	Protein YOP1.	0.541
A0A1J7IGG4	A0A1J7JPC2	A0A1J7IGG4	A0A1J7JPC2	Uncharacterized protein.	Protein YOP1.	0.503
A0A1J7IS88	A0A1J7JPC2	A0A1J7IS88	A0A1J7JPC2	F-box domain-containing protein.	Protein YOP1.	0.482
A0A1J7IU80	A0A1J7JP39	A0A1J7IU80	A0A1J7JP39	Zinc_ribbon_10 domain-containing protein.	Reticulon-like protein.	0.661
A0A1J7IU80	A0A1J7JPC2	A0A1J7IU80	A0A1J7JPC2	Zinc_ribbon_10 domain-containing protein.	Protein YOP1.	0.601
A0A1J7IU80	SEY1	A0A1J7IU80	A0A1J7IJ81	Zinc_ribbon_10 domain-containing protein.	Protein SEY1; Cooperates with the reticulon proteins and tubule-shaping DP1 family proteins to generate and maintain the structure of the tubular endoplasmic reticulum network. Has GTPase activity, which is required for its function in ER organization; Belongs to the TRAFAC class dynamin-like GTPase superfamily. GB1/RHD3-type GTPase family. RHD3 subfamily.	0.640
A0A1J7JAC2	A0A1J7JP39	A0A1J7JAC2	A0A1J7JP39	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	Reticulon-like protein.	0.638
A0A1J7JAC2	A0A1J7JPC2	A0A1J7JAC2	A0A1J7JPC2	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	Protein YOP1.	0.569
A0A1J7JAC2	A0A1J7JQN7	A0A1J7JAC2	A0A1J7JQN7	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	ML domain-containing protein.	0.456
A0A1J7JB80	A0A1J7IB07	A0A1J7JB80	A0A1J7IB07	Er to golgi transport protein yif1.	Putative Golgi membrane protein.	0.954
A0A1J7JB80	A0A1J7JPC2	A0A1J7JB80	A0A1J7JPC2	Er to golgi transport protein yif1.	Protein YOP1.	0.485
A0A1J7JP39	A0A1J7IU80	A0A1J7JP39	A0A1J7IU80	Reticulon-like protein.	Zinc_ribbon_10 domain-containing protein.	0.661
A0A1J7JP39	A0A1J7JAC2	A0A1J7JP39	A0A1J7JAC2	Reticulon-like protein.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.638
A0A1J7JP39	A0A1J7JPC2	A0A1J7JP39	A0A1J7JPC2	Reticulon-like protein.	Protein YOP1.	0.799
A0A1J7JP39	SEY1	A0A1J7JP39	A0A1J7IJ81	Reticulon-like protein.	Protein SEY1; Cooperates with the reticulon proteins and tubule-shaping DP1 family proteins to generate and maintain the structure of the tubular endoplasmic reticulum network. Has GTPase activity, which is required for its function in ER organization; Belongs to the TRAFAC class dynamin-like GTPase superfamily. GB1/RHD3-type GTPase family. RHD3 subfamily.	0.783
A0A1J7JPC2	A0A1J7IB07	A0A1J7JPC2	A0A1J7IB07	Protein YOP1.	Putative Golgi membrane protein.	0.536
A0A1J7JPC2	A0A1J7IB29	A0A1J7JPC2	A0A1J7IB29	Protein YOP1.	Integral peroxisomal membrane peroxin.	0.541
A0A1J7JPC2	A0A1J7IGG4	A0A1J7JPC2	A0A1J7IGG4	Protein YOP1.	Uncharacterized protein.	0.503