STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1J7JPW6CobW-domain-containing protein. (372 aa)    
Predicted Functional Partners:
A0A1J7JQI0
Ribosomal protein S14.
  
 
 0.700
A0A1J7IUZ5
Glucocorticoid receptor-like (DNA-binding domain).
  
 
 0.698
A0A1J7IK09
Uncharacterized protein.
  
  
 0.697
A0A1J7J6Y3
Uncharacterized protein.
  
  
 0.599
A0A1J7J4A8
Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).
    
   0.577
A0A1J7JC94
Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).
    
   0.577
A0A1J7JFZ4
Uncharacterized protein.
    
   0.577
A0A1J7JKE3
tRNA-synt_1e domain-containing protein.
  
  
 0.476
A0A1J7I435
Histidine biosynthesis trifunctional protein.
   
 
 0.432
Your Current Organism:
Coniochaeta ligniaria
NCBI taxonomy Id: 1408157
Other names: C. ligniaria NRRL 30616, Coniochaeta ligniaria NRRL 30616
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