A0A1J7JRA6 protein (Coniochaeta ligniaria) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1J7JRA6

CPSF_A domain-containing protein. (1163 aa)

Predicted Functional Partners:

A0A1J7IMS6

0.999

A0A1J7J3G6

0.999

A0A1J7JJ32

0.998

A0A1J7JTH5

0.998

A0A1J7IFJ2

0.993

A0A1J7IJM6

0.972

A0A1J7JTI9

0.970

A0A1J7K0V6

0.968

A0A1J7J0P3

0.959

A0A1J7INM0

0.942

Your Current Organism:

Coniochaeta ligniaria

NCBI taxonomy Id: 1408157
Other names: C. ligniaria NRRL 30616, Coniochaeta ligniaria NRRL 30616

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1J7IFJ2	A0A1J7IJM6	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	Uncharacterized protein.	0.778
A0A1J7IFJ2	A0A1J7IMS6	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	WD40 repeat-like protein.	0.892
A0A1J7IFJ2	A0A1J7J0P3	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	Mov34-domain-containing protein.	0.924
A0A1J7IFJ2	A0A1J7J3G6	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	Cullin-domain-containing protein; Belongs to the cullin family.	0.960
A0A1J7IFJ2	A0A1J7JJ32	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	WD40 repeat-like protein.	0.774
A0A1J7IFJ2	A0A1J7JRA6	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	CPSF_A domain-containing protein.	0.993
A0A1J7IFJ2	A0A1J7JTH5	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	Ring-box 1.	0.940
A0A1J7IFJ2	A0A1J7K0V6	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	PCI domain-containing protein.	0.860
A0A1J7IJM6	A0A1J7IFJ2	Uncharacterized protein.	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	0.778
A0A1J7IJM6	A0A1J7J0P3	Uncharacterized protein.	Mov34-domain-containing protein.	0.768
A0A1J7IJM6	A0A1J7J3G6	Uncharacterized protein.	Cullin-domain-containing protein; Belongs to the cullin family.	0.868
A0A1J7IJM6	A0A1J7JJ32	Uncharacterized protein.	WD40 repeat-like protein.	0.660
A0A1J7IJM6	A0A1J7JRA6	Uncharacterized protein.	CPSF_A domain-containing protein.	0.972
A0A1J7IJM6	A0A1J7JTH5	Uncharacterized protein.	Ring-box 1.	0.705
A0A1J7IJM6	A0A1J7JTI9	Uncharacterized protein.	WD40 repeat-like protein.	0.738
A0A1J7IJM6	A0A1J7K0V6	Uncharacterized protein.	PCI domain-containing protein.	0.767
A0A1J7IMS6	A0A1J7IFJ2	WD40 repeat-like protein.	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	0.892
A0A1J7IMS6	A0A1J7INM0	WD40 repeat-like protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.929
A0A1J7IMS6	A0A1J7J0P3	WD40 repeat-like protein.	Mov34-domain-containing protein.	0.888
A0A1J7IMS6	A0A1J7J3G6	WD40 repeat-like protein.	Cullin-domain-containing protein; Belongs to the cullin family.	0.979