STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1J7JVF2Usp domain-containing protein. (374 aa)    
Predicted Functional Partners:
A0A1J7JAF0
TPR-like protein.
    
 0.856
A0A1J7IXZ4
CDC73-domain-containing protein.
    
 0.797
A0A1J7J5T2
Uncharacterized protein.
    
 0.771
A0A1J7JTY2
Tetratricopeptide repeat protein 1.
    
 0.769
A0A1J7IBS3
Tr-type G domain-containing protein.
    
 0.737
A0A1J7JRA6
CPSF_A domain-containing protein.
    
  0.717
A0A1J7IT19
Ski2_N domain-containing protein.
    
 0.707
A0A1J7JN66
DSHCT domain-containing protein.
    
 0.707
A0A1J7IJ87
SMN domain-containing protein.
   
 0.701
A0A1J7J3G6
Cullin-domain-containing protein; Belongs to the cullin family.
    
  0.701
Your Current Organism:
Coniochaeta ligniaria
NCBI taxonomy Id: 1408157
Other names: C. ligniaria NRRL 30616, Coniochaeta ligniaria NRRL 30616
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.