STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1J7K3L2ERCC4 domain-containing protein. (594 aa)    
Predicted Functional Partners:
A0A1J7IR13
Putative Werner syndrome helicase.
   
 0.996
A0A1J7IBM1
Uncharacterized protein.
   
 0.989
A0A1J7J6F9
DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.
   
 0.983
A0A1J7J098
DUF1767 domain-containing protein.
    
 0.973
A0A1J7J664
P-loop containing nucleoside triphosphate hydrolase protein.
    
 0.965
A0A1J7JNT5
DNA repair protein.
    
 0.962
A0A1J7I5Y6
DNA repair protein.
    
 0.958
A0A1J7JV23
Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.
    
 0.958
A0A1J7IKA8
UDP-Glycosyltransferase/glycogen phosphorylase.
   
 0.954
A0A1J7J5V0
Uncharacterized protein.
   
 0.950
Your Current Organism:
Coniochaeta ligniaria
NCBI taxonomy Id: 1408157
Other names: C. ligniaria NRRL 30616, Coniochaeta ligniaria NRRL 30616
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