STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T310_9635Protein pxr1. (294 aa)    
Predicted Functional Partners:
T310_7286
Small nucleolar ribonucleoprotein complex subunit.
   
   0.974
T310_4508
Pre-mRNA splicing factor ATP-dependent RNA helicase Prp43.
   
 
 0.974
T310_0649
rRNA processing protein Bystin.
   
   0.971
T310_7792
Fibrillarin.
   
   0.959
T310_3321
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
   0.956
T310_6535
Nuclear protein (Sgd1).
   
   0.954
T310_1315
RNA helicase; Belongs to the DEAD box helicase family.
   
   0.952
T310_0755
ATP-dependent RNA helicase (Hrh1).
   
   0.952
T310_0205
Uncharacterized protein.
    
 
 0.946
T310_0579
Protein MAK16; Belongs to the MAK16 family.
   
   0.901
Your Current Organism:
Rasamsonia emersonii
NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.