T310_9487 protein (Rasamsonia emersonii) - STRING interaction network

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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protein homology

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[Homology]

Score

T310_9487

Uncharacterized protein. (1336 aa)

Predicted Functional Partners:

T310_3515

0.988

T310_6259

0.987

T310_6148

0.987

T310_6024

0.985

T310_7530

0.942

T310_6756

0.898

T310_5540

0.885

T310_3957

0.859

T310_2293

0.844

T310_3197

0.842

Your Current Organism:

Rasamsonia emersonii

NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T310_2293	T310_3197	A0A0F4YZY7	A0A0F4YXH9	Nuclear pore complex subunit Nup159.	Nuclear pore complex subunit Nup192; Belongs to the cullin family.	0.982
T310_2293	T310_3515	A0A0F4YZY7	A0A0F4YX55	Nuclear pore complex subunit Nup159.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.993
T310_2293	T310_3957	A0A0F4YZY7	A0A0F4YUV4	Nuclear pore complex subunit Nup159.	Uncharacterized protein.	0.988
T310_2293	T310_6024	A0A0F4YZY7	A0A0F4YPF4	Nuclear pore complex subunit Nup159.	Nuclear pore complex subunit (SEC13); Belongs to the WD repeat SEC13 family.	0.976
T310_2293	T310_6148	A0A0F4YZY7	A0A0F4YPT0	Nuclear pore complex subunit Nup159.	Nuclear pore complex subunit Nup133.	0.990
T310_2293	T310_6259	A0A0F4YZY7	A0A0F4YNB3	Nuclear pore complex subunit Nup159.	Nucleoporin SONB.	0.995
T310_2293	T310_6756	A0A0F4YZY7	A0A0F4YNR0	Nuclear pore complex subunit Nup159.	Nucleoporin.	0.977
T310_2293	T310_7530	A0A0F4YZY7	A0A0F4YJV9	Nuclear pore complex subunit Nup159.	Nucleoporin (Nup184).	0.832
T310_2293	T310_9487	A0A0F4YZY7	A0A0F4YGW3	Nuclear pore complex subunit Nup159.	Uncharacterized protein.	0.844
T310_3197	T310_2293	A0A0F4YXH9	A0A0F4YZY7	Nuclear pore complex subunit Nup192; Belongs to the cullin family.	Nuclear pore complex subunit Nup159.	0.982
T310_3197	T310_3515	A0A0F4YXH9	A0A0F4YX55	Nuclear pore complex subunit Nup192; Belongs to the cullin family.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.994
T310_3197	T310_3957	A0A0F4YXH9	A0A0F4YUV4	Nuclear pore complex subunit Nup192; Belongs to the cullin family.	Uncharacterized protein.	0.999
T310_3197	T310_6024	A0A0F4YXH9	A0A0F4YPF4	Nuclear pore complex subunit Nup192; Belongs to the cullin family.	Nuclear pore complex subunit (SEC13); Belongs to the WD repeat SEC13 family.	0.978
T310_3197	T310_6148	A0A0F4YXH9	A0A0F4YPT0	Nuclear pore complex subunit Nup192; Belongs to the cullin family.	Nuclear pore complex subunit Nup133.	0.986
T310_3197	T310_6259	A0A0F4YXH9	A0A0F4YNB3	Nuclear pore complex subunit Nup192; Belongs to the cullin family.	Nucleoporin SONB.	0.979
T310_3197	T310_6756	A0A0F4YXH9	A0A0F4YNR0	Nuclear pore complex subunit Nup192; Belongs to the cullin family.	Nucleoporin.	0.995
T310_3197	T310_7530	A0A0F4YXH9	A0A0F4YJV9	Nuclear pore complex subunit Nup192; Belongs to the cullin family.	Nucleoporin (Nup184).	0.962
T310_3197	T310_9487	A0A0F4YXH9	A0A0F4YGW3	Nuclear pore complex subunit Nup192; Belongs to the cullin family.	Uncharacterized protein.	0.842
T310_3515	T310_2293	A0A0F4YX55	A0A0F4YZY7	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex subunit Nup159.	0.993
T310_3515	T310_3197	A0A0F4YX55	A0A0F4YXH9	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex subunit Nup192; Belongs to the cullin family.	0.994

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Network Stats

number of nodes:

8

number of edges:

16

average node degree:

4

avg. local clustering coefficient:

0.795

expected number of edges:

12

PPI enrichment p-value:

0.184

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
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Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:33133038

(2020) Bryophytes Harbor Cultivable Actinobacteria With Plant Growth Promoting Potential.

3 of 10

2.15

2.8

6.95e-06

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1756

Mixed, incl. Glutamine family amino acid biosynthetic process, and Ornithine cyclodeaminase, N-terminal

4 of 29

1.82

1.81

0.00029

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0346

Stress response

2 of 8

2.07

0.88

0.0326

KW-0143

Chaperone

2 of 12

1.9

0.86

0.0328

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF01645

Conserved region in glutamate synthase

2 of 2

2.68

1.17

0.0123

PF01493

GXGXG motif

2 of 2

2.68

1.17

0.0123

PF00310

Glutamine amidotransferases class-II

2 of 2

2.68

1.17

0.0123

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR036485

Glutamate synthase, alpha subunit, C-terminal domain superfamily

2 of 2

2.68

0.92

0.0316

IPR006982

Glutamate synthase, central-N

2 of 2

2.68

0.92

0.0316

IPR002932

Glutamate synthase domain

2 of 2

2.68

0.92

0.0316

IPR002489

Glutamate synthase, alpha subunit, C-terminal

2 of 2

2.68

0.92

0.0316

IPR029055

Nucleophile aminohydrolases, N-terminal

2 of 4

2.37

0.91

0.0316

(more ...)

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