STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T310_7711Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (464 aa)    
Predicted Functional Partners:
T310_8546
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
  
 0.973
T310_4682
Arginase; Belongs to the arginase family.
  
 
 0.970
T310_0820
Ornithine aminotransferase.
    
 0.954
T310_0717
Agmatinase; Belongs to the arginase family.
  
 
 0.927
T310_9311
Aspartate-semialdehyde dehydrogenase.
  
 
 0.894
T310_1910
Agmatinase; Belongs to the arginase family.
  
 
 0.888
T310_1280
Agmatinase; Belongs to the arginase family.
  
 
 0.888
T310_10196
Argininosuccinate synthase.
  
 
 0.877
T310_5067
Proline utilization protein PrnX.
  
 
 0.864
T310_4665
Homoserine dehydrogenase.
  
 
 0.852
Your Current Organism:
Rasamsonia emersonii
NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.