STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T310_5711Ubiquitin--protein ligase; Belongs to the ubiquitin-conjugating enzyme family. (185 aa)    
Predicted Functional Partners:
T310_6514
Ubiquitin-like domain-containing protein.
   
 0.950
T310_4960
UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.
   
 0.950
T310_8009
Uncharacterized protein.
    
 0.896
T310_4108
Ubiquitin ligase subunit HrtA.
   
 0.890
T310_6350
Ubiquitin.
    
 0.873
T310_0369
BZIP domain-containing protein.
    
 0.873
T310_5279
Ubiquitin--protein ligase; Belongs to the ubiquitin-conjugating enzyme family.
  
 
0.844
T310_10252
Cullin; Belongs to the cullin family.
   
 0.820
T310_2840
SCF ubiquitin ligase subunit CulC; Belongs to the cullin family.
   
 0.820
T310_1268
NEDD8 activating enzyme (UbaC).
  
 0.819
Your Current Organism:
Rasamsonia emersonii
NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.