T310_4780 protein (Rasamsonia emersonii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T310_4780

Uncharacterized protein. (406 aa)

Predicted Functional Partners:

T310_8526

0.752

T310_1937

0.752

T310_6510

0.744

T310_1215

0.744

T310_0293

0.727

T310_1692

0.717

T310_1230

0.717

T310_9999

0.705

T310_8596

0.705

T310_5544

0.705

Your Current Organism:

Rasamsonia emersonii

NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T310_0293	T310_1215	A0A0F4Z719	A0A0F4Z336	rRNA biogenesis protein RRP5.	Translation initiation factor IF-2.	0.802
T310_0293	T310_1230	A0A0F4Z719	A0A0F4Z351	rRNA biogenesis protein RRP5.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.667
T310_0293	T310_1692	A0A0F4Z719	A0A0F4Z179	rRNA biogenesis protein RRP5.	Glutamine amidotransferase type-1 domain-containing protein.	0.667
T310_0293	T310_4780	A0A0F4Z719	A0A0F4YSF3	rRNA biogenesis protein RRP5.	Uncharacterized protein.	0.727
T310_0293	T310_5544	A0A0F4Z719	A0A0F4YQP9	rRNA biogenesis protein RRP5.	Mitochondrial exoribonuclease Cyt-4.	0.622
T310_0293	T310_6510	A0A0F4Z719	A0A0F4YPD5	rRNA biogenesis protein RRP5.	Mitochondrial translation initiation factor IF-2.	0.802
T310_0293	T310_8596	A0A0F4Z719	A0A0F4YH28	rRNA biogenesis protein RRP5.	Cell wall biogenesis protein phosphatase Ssd1.	0.664
T310_0293	T310_9999	A0A0F4Z719	A0A0F4YFN8	rRNA biogenesis protein RRP5.	Exosomal 3'-5' exoribonuclease complex.	0.664
T310_1215	T310_0293	A0A0F4Z336	A0A0F4Z719	Translation initiation factor IF-2.	rRNA biogenesis protein RRP5.	0.802
T310_1215	T310_1230	A0A0F4Z336	A0A0F4Z351	Translation initiation factor IF-2.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.634
T310_1215	T310_1692	A0A0F4Z336	A0A0F4Z179	Translation initiation factor IF-2.	Glutamine amidotransferase type-1 domain-containing protein.	0.634
T310_1215	T310_4780	A0A0F4Z336	A0A0F4YSF3	Translation initiation factor IF-2.	Uncharacterized protein.	0.744
T310_1215	T310_5544	A0A0F4Z336	A0A0F4YQP9	Translation initiation factor IF-2.	Mitochondrial exoribonuclease Cyt-4.	0.418
T310_1215	T310_8596	A0A0F4Z336	A0A0F4YH28	Translation initiation factor IF-2.	Cell wall biogenesis protein phosphatase Ssd1.	0.418
T310_1215	T310_9999	A0A0F4Z336	A0A0F4YFN8	Translation initiation factor IF-2.	Exosomal 3'-5' exoribonuclease complex.	0.418
T310_1230	T310_0293	A0A0F4Z351	A0A0F4Z719	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	rRNA biogenesis protein RRP5.	0.667
T310_1230	T310_1215	A0A0F4Z351	A0A0F4Z336	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Translation initiation factor IF-2.	0.634
T310_1230	T310_4780	A0A0F4Z351	A0A0F4YSF3	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Uncharacterized protein.	0.717
T310_1230	T310_6510	A0A0F4Z351	A0A0F4YPD5	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Mitochondrial translation initiation factor IF-2.	0.640
T310_1692	T310_0293	A0A0F4Z179	A0A0F4Z719	Glutamine amidotransferase type-1 domain-containing protein.	rRNA biogenesis protein RRP5.	0.667