STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T310_4607Pumilio RNA binding protein. (862 aa)    
Predicted Functional Partners:
T310_9540
Integral membrane protein.
    
   0.884
T310_1783
Kelch motif domain protein.
   
   0.715
T310_4543
CCR4-NOT core complex subunit Caf1.
    
 
 0.656
T310_1644
CCR4-NOT transcription complex subunit 7.
    
 
 0.656
RPS0
40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
    
  0.603
T310_4567
Poly(A)-specific ribonuclease.
   
 
 0.578
T310_1211
40S ribosomal protein S2.
    
  0.573
T310_2828
AD domain-containing protein.
    
   0.543
T310_8009
Uncharacterized protein.
   
   0.542
T310_6018
Uncharacterized protein.
    
 0.539
Your Current Organism:
Rasamsonia emersonii
NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64
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