STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T310_3833Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (394 aa)    
Predicted Functional Partners:
T310_8167
RAB geranylgeranyl transferase alpha subunit.
    
 0.980
T310_0240
Anucleate primary sterigmata (ApsB).
    
 0.848
T310_1679
dGTPase.
    
 0.811
T310_8102
Ras GTPase Rab11.
    
 0.800
T310_10142
Uncharacterized protein.
    
 0.779
T310_10143
dGTPase.
    
 0.779
T310_4612
Secretion related GTPase SrgD.
    
 0.774
T310_3832
Uncharacterized protein.
 
      0.774
T310_3682
Rab.
    
 0.742
T310_3666
Synaptobrevin; Belongs to the synaptobrevin family.
    
 
 0.724
Your Current Organism:
Rasamsonia emersonii
NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64
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