STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T310_3349Uncharacterized protein. (823 aa)    
Predicted Functional Partners:
T310_7897
SWI-SNF complex subunit.
    
 0.970
T310_7461
SNF5/SMARCB1/INI1 protein.
   
 0.966
T310_3613
Chromatin remodeling and histone acetyltransferase complexes subunit; Belongs to the actin family.
    
 0.966
T310_6778
Polybromo-1.
   
 0.915
T310_0227
RSC complex subunit (RSC1).
   
 0.915
T310_10024
DNA topoisomerase.
    
 0.903
T310_1934
SWI-SNF complex subunit (Snf5).
   
 0.898
T310_0929
Zn(2)-C6 fungal-type domain-containing protein.
   
 0.898
T310_4516
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.884
T310_7279
Uncharacterized protein.
   
 0.851
Your Current Organism:
Rasamsonia emersonii
NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.