STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T310_3604mRNA splicing factor (Prp1/Zer1). (980 aa)    
Predicted Functional Partners:
T310_7844
MPN domain-containing protein.
   
 0.997
T310_8015
U5 snRNP component Snu114.
   
 0.997
T310_5397
U5 snRNP complex subunit.
   
 0.997
T310_2185
Pre-mRNA splicing helicase.
   
 0.997
T310_6886
Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.
    
 0.996
T310_6555
DNA binding protein SART-1.
   
 0.995
T310_1069
Small nuclear ribonucleoprotein Sm D3.
   
 0.995
T310_9510
Pre-mRNA splicing factor (Prp31).
   
 0.993
T310_0093
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.993
T310_9629
Splicing factor 3b, subunit 2.
  
 
 0.992
Your Current Organism:
Rasamsonia emersonii
NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.