STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T310_1896RNA lariat debranching enzyme. (752 aa)    
Predicted Functional Partners:
T310_8263
mRNA splicing factor RNA helicase (Prp16).
    
 
 0.835
T310_2843
CwfJ domain protein.
   
 
 0.718
T310_4508
Pre-mRNA splicing factor ATP-dependent RNA helicase Prp43.
    
 
 0.616
T310_9529
Protein kinase regulator (Mob1).
 
      0.545
T310_5675
Nuclear import and export protein Msn5.
   
  
 0.517
T310_7879
mRNA splicing factor (Prp18).
    
 
 0.501
T310_0183
Smr domain protein.
      
 0.491
T310_9567
RNA helicase/RNAse III; Belongs to the helicase family. Dicer subfamily.
      
 0.479
T310_8244
RNA helicase-like splicing factor (HRH1).
    
 
 0.466
T310_7078
Cell cycle control protein (Cwf19).
   
  
 0.466
Your Current Organism:
Rasamsonia emersonii
NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.