STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T310_0890D-xylose 1-dehydrogenase. (320 aa)    
Predicted Functional Partners:
T310_9368
Alcohol dehydrogenase.
  
 0.909
T310_3681
L-iditol 2-dehydrogenase.
  
 0.909
T310_9024
Zinc-dependent alcohol dehydrogenase.
  
 0.900
T310_2741
L-arabinitol 4-dehydrogenase.
  
 0.875
T310_0245
L-iditol 2-dehydrogenase.
  
 0.875
T310_9605
Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase.
   
 
 0.762
T310_5895
GFO_IDH_MocA domain-containing protein.
   
 
 0.729
T310_9338
Tryptophan synthase.
    
  0.712
T310_6387
Dihydrodipicolinate synthase; Belongs to the DapA family.
 
   
 0.657
HCR1
Eukaryotic translation initiation factor 3 subunit J; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
      
 0.650
Your Current Organism:
Rasamsonia emersonii
NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.