STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhbHSigma 54 modulation protein/ribosomal protein S30EA. (182 aa)    
Predicted Functional Partners:
ptsN
Nitrogen regulatory protein PtsN.
  
  
 0.818
rpsU
30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.797
rplP
50S ribosomal subunit protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
  
 
   0.794
rpmA
50S ribosomal subunit protein L27.
   
 
 0.783
rpsI
30S ribosomal subunit protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.781
Epro_0088
Putative P-loop-containing kinase; Displays ATPase and GTPase activities.
 
  
 0.778
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
  
   0.777
rpmH
50S ribosomal subunit protein L34; Belongs to the bacterial ribosomal protein bL34 family.
    
 
 0.777
rpmC
50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.775
rpsP
30S ribosomal subunit protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.769
Your Current Organism:
Endomicrobium proavitum
NCBI taxonomy Id: 1408281
Other names: Candidatus Endomicrobium sp. Rsa215, DSM 29378, E. proavitum, Endomicrobium proavitum Zheng et al. 2018, JCM 30189, JCM 32103, strain Rsa215
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