STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Epro_0152Putative Diguanylate cyclase. (447 aa)    
Predicted Functional Partners:
Epro_0958
Hypothetical protein.
 
 0.984
Epro_0151
Putative Diguanylate cyclase.
 
  
0.913
Epro_0150
Hypothetical protein.
       0.773
amtB
Ammonium transporter; Belongs to the P(II) protein family.
 
    
 0.714
Epro_0933
Hypothetical protein.
   
 
 0.581
ftsQ-2
Cell division protein FtsQ.
 
  
 0.569
ycjV
Putative sugar transporter subunit: ATP-binding component of ABC superfamily transporter; Belongs to the ABC transporter superfamily.
       0.506
Epro_1209
Exported protein of unknown function.
 
 
 
 0.486
thiH
Thiamine biosynthesis protein ThiH.
  
  
 0.451
birA
Biotin operon repressor/biotin-[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.417
Your Current Organism:
Endomicrobium proavitum
NCBI taxonomy Id: 1408281
Other names: Candidatus Endomicrobium sp. Rsa215, DSM 29378, E. proavitum, Endomicrobium proavitum Zheng et al. 2018, JCM 30189, JCM 32103, strain Rsa215
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