STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaKLipopolysaccharide heptosyltransferase. (354 aa)    
Predicted Functional Partners:
Epro_0191
Putative bacteriophage tail fiber protein.
       0.773
Epro_0190
Ankyrin, putative.
  
    0.718
Epro_0188
Exported protein of unknown function.
       0.689
Epro_0189
Exported protein of unknown function.
       0.689
waaF-2
ADP-heptose:LPS heptosyltransferase II.
  
     0.663
Epro_0401
Putative Heptosyltransferase II.
  
     0.660
Epro_0320
Hypothetical protein.
  
     0.653
waaF
ADP-heptose:LPS heptosyltransferase II.
  
     0.652
Epro_0187
Hypothetical protein.
       0.514
rfaE
ADP-heptose synthase.
  
  
 0.492
Your Current Organism:
Endomicrobium proavitum
NCBI taxonomy Id: 1408281
Other names: Candidatus Endomicrobium sp. Rsa215, DSM 29378, E. proavitum, Endomicrobium proavitum Zheng et al. 2018, JCM 30189, JCM 32103, strain Rsa215
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.