STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
waaF-2ADP-heptose:LPS heptosyltransferase II. (361 aa)    
Predicted Functional Partners:
Epro_0320
Hypothetical protein.
 
  
 
0.980
waaF
ADP-heptose:LPS heptosyltransferase II.
 
  
 
0.977
rfaF
Lipopolysaccharide heptosyltransferase II.
  
  
  0.972
Epro_0401
Putative Heptosyltransferase II.
  
  
 
0.929
kdtA
Three-deoxy-d-manno-octulosonic-acid transferase domain-containing protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
  
 0.918
rfaE
ADP-heptose synthase.
  
  
 0.715
rfaK
Lipopolysaccharide heptosyltransferase.
  
     0.663
rfaE-2
ADP-heptose synthase.
  
  
 0.468
Epro_0323
Hypothetical protein.
       0.445
wcaA
Glycosyltransferase, group 2 family protein.
  
    0.438
Your Current Organism:
Endomicrobium proavitum
NCBI taxonomy Id: 1408281
Other names: Candidatus Endomicrobium sp. Rsa215, DSM 29378, E. proavitum, Endomicrobium proavitum Zheng et al. 2018, JCM 30189, JCM 32103, strain Rsa215
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