STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Epro_0331NAD-dependent epimerase/dehydratase. (289 aa)    
Predicted Functional Partners:
rfbE
NAD-dependent epimerase/dehydratase.
 
  
 0.946
rfbF
Glucose-1-phosphate cytidylyltransferase.
  
 
 0.835
rfbV
Glycosyl transferase family protein.
 
    0.824
Epro_0328
Glycosyl transferase family protein.
 
    0.808
Epro_0332
NAD-dependent epimerase/dehydratase.
 
    
0.794
Epro_0327
NAD-dependent epimerase/dehydratase.
 
    
0.788
rfbX
Putative O-antigen export protein.
  
  
 0.785
waaJ
UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase.
     
 0.779
waaL
O-antigen ligase.
       0.773
Epro_0323
Hypothetical protein.
  
  
 0.713
Your Current Organism:
Endomicrobium proavitum
NCBI taxonomy Id: 1408281
Other names: Candidatus Endomicrobium sp. Rsa215, DSM 29378, E. proavitum, Endomicrobium proavitum Zheng et al. 2018, JCM 30189, JCM 32103, strain Rsa215
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