STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Epro_0843Hypothetical protein. (3168 aa)    
Predicted Functional Partners:
Epro_0844
Exported protein of unknown function.
 
     0.884
Epro_0857
Exported protein of unknown function.
  
     0.775
Epro_0840
Hypothetical protein.
       0.773
Epro_0841
Exported protein of unknown function.
      
0.773
Epro_0842
Hypothetical protein.
       0.773
Epro_0838
Hypothetical protein.
       0.605
Epro_0839
Exported protein of unknown function.
      
0.605
Epro_0845
Metallophosphoesterase, calcineurin superfamily.
       0.476
nifU
Nitrogen-fixing NifU domain protein.
       0.419
Your Current Organism:
Endomicrobium proavitum
NCBI taxonomy Id: 1408281
Other names: Candidatus Endomicrobium sp. Rsa215, DSM 29378, E. proavitum, Endomicrobium proavitum Zheng et al. 2018, JCM 30189, JCM 32103, strain Rsa215
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.