STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Epro_1007Putative Glycosyl transferase, family 9. (421 aa)    
Predicted Functional Partners:
waaC
Lipopolysaccharide heptosyltransferase I.
  
     0.773
Epro_1008
Membrane protein of unknown function.
       0.773
rfaF
Lipopolysaccharide heptosyltransferase II.
  
     0.725
rfaE
ADP-heptose synthase.
  
  
 0.695
Epro_1006
Hypothetical protein.
       0.613
rfaE-2
ADP-heptose synthase.
  
  
 0.550
Epro_1009
Membrane protein of unknown function.
       0.548
Epro_1005
Aconitate hydratase.
       0.536
gmhB
D,D-heptose 1,7-bisphosphate phosphatase.
   
 0.420
Epro_1004
Heat shock protein.
       0.401
Your Current Organism:
Endomicrobium proavitum
NCBI taxonomy Id: 1408281
Other names: Candidatus Endomicrobium sp. Rsa215, DSM 29378, E. proavitum, Endomicrobium proavitum Zheng et al. 2018, JCM 30189, JCM 32103, strain Rsa215
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