STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Epro_1247Nucleoside-diphosphate-sugar epimerases-like protein. (281 aa)    
Predicted Functional Partners:
cat
Putative chloramphenicol acetyltransferase.
  
  
 0.813
Epro_1244
Hypothetical protein.
 
     0.808
Epro_1252
Glycosyl transferase family protein.
  
  
 0.787
fdtA
TDP-4-oxo-6-deoxy-alpha-D-glucose-3, 4-oxoisomerase.
  
  
 0.782
Epro_1246
Hypothetical protein.
  
  
 0.782
Epro_1249
Hypothetical protein.
       0.773
Epro_1250
Hypothetical protein.
       0.773
Epro_1251
Hypothetical protein.
       0.773
fdtB
dTDP-3-amino-3,6-dideoxy-alpha-D-galactopyranose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.755
waaX
Putative beta1,4-galactosyltransferase.
       0.629
Your Current Organism:
Endomicrobium proavitum
NCBI taxonomy Id: 1408281
Other names: Candidatus Endomicrobium sp. Rsa215, DSM 29378, E. proavitum, Endomicrobium proavitum Zheng et al. 2018, JCM 30189, JCM 32103, strain Rsa215
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